Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit a | shim_07670 | Q9CLB1 | Negative | 760621 - 761958 | 46731.3 |
| thiamine biosynthesis lipoprotein apbe precursor | shim_07680 | A5F5Y3 | Positive | 762181 - 763200 | 35716.5 |
| hypothetical protein | shim_07690 | Not Available | Positive | 763213 - 763452 | 8586.58 |
| arabinose 5-phosphate isomerase kdsd | shim_07700 | P32987 | Positive | 763734 - 764255 | 18976.9 |
| succinyl-coa:(r)-benzylsuccinate coa-transferase subunit bbsf | shim_07710 | Q7CXU0 | Negative | 764298 - 765410 | 39606.8 |
| acyl-coa dehydrogenase | shim_07720 | Q92947 | Positive | 765687 - 766901 | 44117.0 |
| putative d,d-dipeptide-binding periplasmic protein ddpa precursor | shim_07730 | Q8YC41 | Negative | 767040 - 768854 | 67059.8 |
| d-beta-hydroxybutyrate dehydrogenase | shim_07740 | O86034 | Positive | 769165 - 769938 | 27061.4 |
| hypothetical protein | shim_07750 | F4IUE7 | Negative | 770068 - 770745 | 24728.4 |
| pseudouridine-5'-phosphate glycosidase | shim_07760 | Q28PY7 | Negative | 770841 - 771761 | 31410.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
