Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine synthase | shim_07570 | Q7RYW6 | Positive | 751128 - 752165 | 36472.4 |
| putative mscs family protein.1 precursor | shim_07580 | Not Available | Positive | 752181 - 754622 | 88666.9 |
| alanine--trna ligase | shim_07590 | Q8TPA0 | Positive | 754609 - 755346 | 26217.4 |
| Trna-ser | Not Available | Not Available | Positive | 755417 - 755506 | Not Available |
| hypothetical protein | shim_07610 | Not Available | Negative | 755621 - 755824 | 7788.17 |
| na(+)-translocating nadh-quinone reductase subunit f | shim_07620 | A6VW13 | Negative | 756121 - 757344 | 45490.4 |
| na(+)-translocating nadh-quinone reductase subunit e | shim_07630 | A6V3A1 | Negative | 757357 - 757965 | 21411.0 |
| na(+)-translocating nadh-quinone reductase subunit d | shim_07640 | B7UZU0 | Negative | 757965 - 758618 | 23380.2 |
| na(+)-translocating nadh-quinone reductase subunit c | shim_07650 | Q8ZBZ2 | Negative | 758618 - 759427 | 28971.2 |
| na(+)-translocating nadh-quinone reductase subunit b | shim_07660 | A4XSP4 | Negative | 759420 - 760619 | 43615.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
