Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_07470 | Not Available | Positive | 742893 - 743579 | 24743.6 |
| dinb family protein | shim_07480 | Not Available | Positive | 743579 - 744097 | 19473.2 |
| dimethylsulfonioproprionate demethylase dmda | shim_07490 | Q5LS57 | Positive | 744088 - 745191 | 40915.9 |
| acrylyl-coa reductase acui | shim_07500 | Q5LS56 | Positive | 745282 - 746274 | 34540.7 |
| hit-like protein | shim_07510 | F4K1R2 | Positive | 746348 - 746764 | 15339.6 |
| cysteine desulfurase | shim_07520 | Q9KII6 | Positive | 746846 - 748066 | 44077.3 |
| hypothetical protein | shim_07530 | Not Available | Negative | 748009 - 748152 | 5269.21 |
| cyclopropane-fatty-acyl-phospholipid synthase | shim_07540 | Not Available | Positive | 748300 - 749508 | 46056.4 |
| hypothetical protein | shim_07550 | Not Available | Positive | 749508 - 749942 | 15226.0 |
| adp-ribose pyrophosphatase | shim_07560 | P83843 | Positive | 749946 - 751070 | 41313.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
