Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyketide cyclase / dehydrase and lipid transport | shim_07370 | Not Available | Negative | 735706 - 736176 | 17907.6 |
| hth-type transcriptional activator ampr | shim_07380 | Not Available | Positive | 736283 - 737185 | 33263.8 |
| stringent starvation protein b | shim_07390 | Not Available | Negative | 737195 - 737668 | 18272.9 |
| putative chromate transport protein | shim_07400 | P14285 | Negative | 737907 - 739025 | 40034.7 |
| snoal-like polyketide cyclase | shim_07410 | Not Available | Negative | 739074 - 739499 | 15787.9 |
| Tmrna,resume consensus sequence (at 199): tacaattgcaaatgacaa | Not Available | Not Available | Positive | 739567 - 739904 | Not Available |
| hypothetical protein | shim_07430 | Not Available | Negative | 740019 - 740660 | 23155.4 |
| hypothetical protein | shim_07440 | Not Available | Negative | 740671 - 741156 | 17490.8 |
| hth-type transcriptional regulator lutr | shim_07450 | Not Available | Negative | 741282 - 742016 | 26735.7 |
| hypothetical protein | shim_07460 | Not Available | Positive | 742105 - 742866 | 27187.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
