Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmolarity sensor protein envz | shim_07270 | P0AEJ4 | Negative | 727588 - 728892 | 48667.1 |
| hydroxyacylglutathione hydrolase | shim_07280 | Not Available | Positive | 728932 - 729846 | 31977.2 |
| Trna-asn | Not Available | Not Available | Positive | 729928 - 730002 | Not Available |
| bifunctional hemolysin/adenylate cyclase precursor | shim_07300 | Not Available | Positive | 730252 - 731727 | 48822.9 |
| hypothetical protein | shim_07310 | Not Available | Negative | 731921 - 732430 | 18183.8 |
| cysteine desulfuration protein sufe | shim_07320 | Q52742 | Positive | 732559 - 732969 | 15201.2 |
| hypothetical protein | shim_07330 | Not Available | Negative | 732994 - 733221 | 8579.23 |
| hypothetical protein | shim_07340 | Not Available | Negative | 733218 - 733391 | 6524.64 |
| sulfoxide reductase heme-binding subunit yedz | shim_07350 | Q3BUZ5 | Negative | 733446 - 734054 | 23410.0 |
| fumarate hydratase class ii | shim_07360 | Q92PB6 | Negative | 734178 - 735572 | 49267.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
