Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hemin transport protein hems | shim_07170 | Q56990 | Positive | 719259 - 720311 | 38711.4 |
| hemin-binding periplasmic protein hmut precursor | shim_07180 | Q56991 | Positive | 720308 - 721177 | 29257.3 |
| hemin transport system permease protein hmuu | shim_07190 | Q56992 | Positive | 721177 - 722253 | 36879.4 |
| hemin import atp-binding protein hmuv | shim_07200 | Q160G4 | Positive | 722257 - 723042 | 27841.5 |
| biopolymer transport protein exbb | shim_07210 | Not Available | Positive | 723044 - 723709 | 23625.8 |
| biopolymer transport protein exbd | shim_07220 | Not Available | Positive | 723710 - 724087 | 13789.8 |
| biopolymer transport protein exbd/tolr | shim_07230 | Not Available | Positive | 724093 - 724476 | 13623.7 |
| gram-negative bacterial tonb protein | shim_07240 | Not Available | Positive | 724686 - 725429 | 25052.3 |
| alcohol dehydrogenase | shim_07250 | Q07288 | Positive | 725464 - 726702 | 43114.0 |
| putative diguanylate cyclase ycdt | shim_07260 | Q73RG3 | Negative | 726822 - 727520 | 25219.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
