Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_07070 | Not Available | Negative | 710898 - 711017 | 4326.13 |
| ai-2 transport protein tqsa | shim_07080 | O51039 | Positive | 711294 - 712391 | 38773.6 |
| hypothetical protein | shim_07090 | Not Available | Positive | 712391 - 712630 | 8985.67 |
| hypothetical protein | shim_07100 | Not Available | Positive | 712640 - 713104 | 16034.0 |
| ribonuclease d | shim_07110 | Q28RA7 | Negative | 713122 - 714279 | 42885.4 |
| phosphoribosylglycinamide formyltransferase | shim_07120 | P08179 | Negative | 714363 - 714956 | 21181.6 |
| phosphoribosylformylglycinamidine cyclo-ligase | shim_07130 | Q5LRF9 | Negative | 714953 - 716002 | 36159.2 |
| Trna-met | Not Available | Not Available | Positive | 716167 - 716242 | Not Available |
| hypothetical protein | shim_07150 | Not Available | Negative | 716380 - 716877 | 17627.0 |
| tonb-dependent heme receptor a precursor | shim_07160 | Not Available | Negative | 716993 - 719161 | 78778.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
