Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative permease yjgp/yjgq family protein | shim_06970 | Not Available | Negative | 702293 - 703408 | 40782.7 |
| cytosol aminopeptidase | shim_06980 | A8LI79 | Positive | 703551 - 705020 | 51016.6 |
| dna polymerase iii subunit chi | shim_06990 | Not Available | Positive | 705026 - 705493 | 16973.8 |
| glyoxalase-like domain protein | shim_07000 | Not Available | Negative | 705620 - 706000 | 13641.1 |
| hxlr-like helix-turn-helix | shim_07010 | Not Available | Positive | 706040 - 706591 | 20177.3 |
| hypothetical protein | shim_07020 | P29938 | Negative | 706689 - 707270 | 21120.7 |
| hypothetical protein | shim_07030 | O66819 | Negative | 707325 - 707951 | 22655.6 |
| putative abc transporter atp-binding protein yhes | shim_07040 | P63390 | Negative | 707989 - 709860 | 68715.8 |
| nucleoside diphosphate kinase | shim_07050 | A8LIX8 | Positive | 709975 - 710397 | 14958.7 |
| hypothetical protein | shim_07060 | Not Available | Negative | 710528 - 710860 | 12152.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
