Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_06870 | Not Available | Negative | 692258 - 692566 | 11088.6 |
| peptide chain release factor 1 | shim_06880 | Q164F8 | Positive | 692628 - 693677 | 38723.0 |
| release factor glutamine methyltransferase | shim_06890 | Q3J2B7 | Positive | 693674 - 694510 | 29635.5 |
| hypothetical protein | shim_06900 | Not Available | Positive | 694737 - 695354 | 22949.0 |
| hypothetical protein | shim_06910 | Not Available | Negative | 695459 - 695884 | 16078.9 |
| ribosomal rna small subunit methyltransferase a | shim_06920 | Q5LQN0 | Negative | 695888 - 696730 | 30600.2 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | shim_06930 | Q1GI38 | Negative | 696807 - 697772 | 33845.9 |
| chaperone sura precursor | shim_06940 | Q21MS8 | Negative | 697769 - 699028 | 45655.5 |
| lps-assembly protein lptd precursor | shim_06950 | Q2S9C0 | Negative | 699025 - 701202 | 81463.7 |
| lipopolysaccharide export system permease protein lptg | shim_06960 | Not Available | Negative | 701199 - 702296 | 39693.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
