Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase rhle | shim_06770 | P25888 | Positive | 682485 - 683873 | 48544.0 |
| trans-2,3-dihydro-3-hydroxyanthranilate isomerase | shim_06780 | Q98KN6 | Negative | 683887 - 684729 | 29681.2 |
| endonuclease/exonuclease/phosphatase family protein | shim_06790 | Not Available | Negative | 684726 - 685433 | 25716.5 |
| hypothetical protein | shim_06800 | Q1GI57 | Negative | 685443 - 686852 | 51238.7 |
| acetyltransferase (gnat) family protein | shim_06810 | Not Available | Negative | 686910 - 687362 | 16601.1 |
| pyrimidine-specific ribonucleoside hydrolase riha | shim_06820 | Q9P6J4 | Negative | 687359 - 688300 | 33668.4 |
| iron uptake protein a1 precursor | shim_06830 | P72827 | Negative | 688538 - 689551 | 36651.3 |
| nucleoside triphosphate pyrophosphohydrolase | shim_06840 | P0AEY4 | Negative | 689671 - 690492 | 30788.2 |
| putative hydrolase yxep | shim_06850 | Not Available | Positive | 690556 - 691719 | 41339.8 |
| hypothetical protein | shim_06860 | Not Available | Positive | 691931 - 692335 | 14581.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
