Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginase | shim_06670 | P0A2Y1 | Negative | 671537 - 672460 | 32738.7 |
| regulatory protein asnc | shim_06680 | Not Available | Positive | 672579 - 673004 | 15662.9 |
| disulfide bond formation protein b | shim_06690 | Not Available | Negative | 673029 - 673508 | 17342.3 |
| snare associated golgi protein | shim_06700 | P44832 | Negative | 673505 - 674083 | 20743.0 |
| Trna-leu | Not Available | Not Available | Positive | 674249 - 674334 | Not Available |
| hypothetical protein | shim_06720 | Not Available | Negative | 674480 - 676204 | 63955.7 |
| molybdenum cofactor guanylyltransferase | shim_06730 | Not Available | Negative | 676170 - 676763 | 20796.2 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_06740 | Q9DBT9 | Negative | 676788 - 679205 | 88965.7 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_06750 | Not Available | Positive | 679352 - 681772 | 89008.2 |
| ferric uptake regulation protein | shim_06760 | O07315 | Negative | 681842 - 682261 | 15723.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
