Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 649320 - 649396 | Not Available |
| vitamin b12-dependent ribonucleotide reductase | shim_06480 | Q89MB9 | Positive | 649980 - 653663 | 133537.0 |
| trimethylamine methyltransferase (mttb) | shim_06490 | Not Available | Negative | 653947 - 655485 | 54999.0 |
| arginine--pyruvate transaminase aruh | shim_06500 | Q9HUI9 | Negative | 655708 - 656967 | 45224.5 |
| redox-sensitive transcriptional activator soxr | shim_06510 | Q9ZHI4 | Negative | 657113 - 657589 | 17920.7 |
| glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein | shim_06520 | Not Available | Positive | 657685 - 658059 | 13758.1 |
| eama-like transporter family protein | shim_06530 | Not Available | Positive | 658052 - 659029 | 33370.6 |
| hypothetical protein | shim_06540 | Not Available | Positive | 659189 - 659467 | 10498.3 |
| hypothetical protein | shim_06550 | Not Available | Negative | 659472 - 659930 | 16559.9 |
| cysteine--trna ligase | shim_06560 | Q1GHI0 | Positive | 660059 - 661438 | 50436.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
