Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-acetyltransferase oata | shim_06370 | Q8Y7I6 | Positive | 637606 - 639492 | 69008.6 |
| anthranilate synthase component 1 | shim_06380 | P95646 | Negative | 639547 - 641058 | 54935.2 |
| peptidyl-prolyl cis-trans isomerase d | shim_06390 | Not Available | Negative | 641095 - 642951 | 66321.8 |
| aspartate aminotransferase | shim_06400 | P77806 | Negative | 643057 - 644244 | 43308.6 |
| xanthine phosphoribosyltransferase | shim_06410 | Q1GHI7 | Negative | 644399 - 644917 | 19158.8 |
| arginine/agmatine antiporter | shim_06420 | Q8ZGS9 | Positive | 645133 - 646494 | 46634.1 |
| enoyl-(acyl-carrier-protein) reductase (nadh) fabi | shim_06430 | P58380 | Negative | 646598 - 647416 | 29173.9 |
| pyridoxine/pyridoxamine 5'-phosphate oxidase | shim_06440 | Q5LRI7 | Positive | 647529 - 648134 | 22684.6 |
| cold shock protein cspv | shim_06450 | Not Available | Positive | 648203 - 648784 | 21137.3 |
| hypothetical protein | shim_06460 | Not Available | Positive | 648757 - 649266 | 18210.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
