Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic pyranopterin monophosphate synthase accessory protein | shim_06270 | Q28R69 | Negative | 627667 - 628143 | 16625.4 |
| indole-3-glycerol phosphate synthase | shim_06280 | Q9ZFA7 | Negative | 628143 - 628955 | 29214.7 |
| uracil-dna glycosylase | shim_06290 | Q1GHJ4 | Negative | 628952 - 629632 | 24555.2 |
| anthranilate phosphoribosyltransferase | shim_06300 | Q5LRH8 | Negative | 629629 - 630648 | 34935.6 |
| anthranilate synthase component 2 | shim_06310 | P26922 | Negative | 630645 - 631343 | 25223.4 |
| divergent polysaccharide deacetylase | shim_06320 | Not Available | Positive | 631408 - 632805 | 47193.8 |
| 3-oxoadipate enol-lactonase 2 | shim_06330 | B7KWT4 | Positive | 632956 - 633762 | 28548.1 |
| membrane-bound lytic murein transglycosylase b precursor | shim_06340 | P41052 | Negative | 633759 - 634910 | 41438.6 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | shim_06350 | Not Available | Negative | 635052 - 637013 | 70421.3 |
| hypothetical protein | shim_06360 | Not Available | Positive | 637218 - 637412 | 7144.54 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
