Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_06170 | Not Available | Positive | 616930 - 617451 | 19198.2 |
| cytochrome c-type biogenesis protein ccmf | shim_06180 | Q00500 | Positive | 617531 - 619504 | 71782.6 |
| cytochrome c-type biogenesis protein ccmh precursor | shim_06190 | Q00501 | Positive | 619501 - 619965 | 17114.9 |
| 1,2-epoxyphenylacetyl-coa isomerase | shim_06200 | P24162 | Positive | 620029 - 620805 | 27758.0 |
| hypothetical protein | shim_06210 | Not Available | Negative | 620813 - 621319 | 19183.5 |
| citrate synthase | shim_06220 | O33915 | Negative | 621561 - 622856 | 48271.6 |
| hypothetical protein | shim_06230 | Not Available | Negative | 622924 - 623472 | 20729.0 |
| comec family competence protein | shim_06240 | P39695 | Positive | 623545 - 625593 | 72478.9 |
| lexa repressor | shim_06250 | Q5LRH4 | Negative | 625587 - 626294 | 25548.9 |
| molybdopterin molybdenumtransferase | shim_06260 | Q9NQX3 | Negative | 626495 - 627670 | 40607.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
