Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase 2 | shim_06070 | Q1GHL5 | Negative | 602288 - 604447 | 76370.5 |
| surface antigen | shim_06080 | Not Available | Negative | 604532 - 605647 | 40117.5 |
| putative mscs family protein yfkc | shim_06090 | Q8R6L9 | Negative | 605653 - 607986 | 85510.7 |
| hth-type transcriptional regulator cynr | shim_06100 | P27111 | Negative | 608207 - 609160 | 36065.4 |
| indolepyruvate ferredoxin oxidoreductase | shim_06110 | Not Available | Positive | 609295 - 612708 | 123515.0 |
| 2-acyl-glycerophospho-ethanolamine acyltransferase | shim_06120 | Not Available | Positive | 612862 - 613740 | 32576.5 |
| glutamate racemase | shim_06130 | A8LMF7 | Positive | 613759 - 614571 | 29259.9 |
| n-acetyl-gamma-glutamyl-phosphate reductase | shim_06140 | Q1GHL0 | Positive | 614678 - 615706 | 36733.2 |
| cytochrome c-type biogenesis protein ccme | shim_06150 | Q5LS91 | Positive | 615738 - 616187 | 16203.5 |
| putative peptidoglycan domain protein | shim_06160 | Not Available | Positive | 616328 - 616939 | 21943.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
