Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase | shim_05970 | Not Available | Negative | 595237 - 595989 | 27739.7 |
| transketolase 1 | shim_05980 | D5AV94 | Negative | 596191 - 598212 | 71968.0 |
| chromosome partition protein smc | shim_05990 | Not Available | Positive | 598485 - 599300 | 28717.3 |
| cell division protein zapa | shim_06000 | Not Available | Positive | 599300 - 599683 | 13743.6 |
| hypothetical protein | shim_06010 | P75925 | Positive | 600005 - 600535 | 19040.8 |
| glutaredoxin-4 | shim_06020 | Q68W05 | Negative | 600612 - 600974 | 13142.5 |
| hypothetical protein | shim_06030 | Not Available | Negative | 601081 - 601314 | 8561.16 |
| hypothetical protein | shim_06040 | Not Available | Negative | 601319 - 601438 | 4053.2 |
| bola-like protein | shim_06050 | Not Available | Negative | 601449 - 601685 | 8631.3 |
| hypothetical protein | shim_06060 | P37497 | Negative | 601751 - 602167 | 14934.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
