Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe | shim_05770 | Not Available | Positive | 576348 - 577109 | 26307.3 |
| hypothetical protein | shim_05780 | P29962 | Positive | 577113 - 577466 | 12417.9 |
| cytochrome c biogenesis atp-binding export protein ccma | shim_05790 | Q5LR15 | Positive | 577785 - 578405 | 21711.2 |
| heme exporter protein b | shim_05800 | P29960 | Positive | 578402 - 579058 | 22639.8 |
| heme exporter protein c | shim_05810 | P52220 | Positive | 579149 - 579901 | 27851.5 |
| heme exporter protein d (ccmd) | shim_05820 | Not Available | Positive | 579901 - 580053 | 5475.73 |
| thiol:disulfide interchange protein cycy precursor | shim_05830 | P36893 | Positive | 580043 - 580609 | 20503.9 |
| alpha-ketoglutarate-dependent taurine dioxygenase | shim_05840 | P83310 | Positive | 580699 - 581526 | 30505.0 |
| aconitate hydratase 1 | shim_05850 | Q9I3F5 | Negative | 581600 - 584287 | 96666.6 |
| hypothetical protein | shim_05860 | Not Available | Positive | 584474 - 585172 | 25553.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
