Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_05670 | Not Available | Negative | 565889 - 566980 | 40230.4 |
| hypothetical protein | shim_05680 | Not Available | Negative | 566970 - 568700 | 63317.5 |
| hypothetical protein | shim_05690 | Not Available | Negative | 568700 - 569062 | 12771.2 |
| hypothetical protein | shim_05700 | Not Available | Positive | 569364 - 569747 | 15093.2 |
| capreomycidine synthase | shim_05710 | Q84CG1 | Negative | 569586 - 570704 | 40809.0 |
| serine--trna ligase | shim_05720 | Q166J5 | Negative | 570895 - 572187 | 46466.0 |
| histidine-binding periplasmic protein precursor | shim_05730 | Not Available | Negative | 572380 - 573114 | 26449.7 |
| preprotein translocase subunit yajc | shim_05740 | Q2YNM1 | Positive | 573385 - 573666 | 10328.9 |
| protein translocase subunit secd | shim_05750 | O33517 | Positive | 573721 - 575382 | 59176.9 |
| protein-export membrane protein secf | shim_05760 | O33568 | Positive | 575387 - 576355 | 35217.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
