Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_05570 | Not Available | Positive | 550496 - 551476 | 35142.6 |
| log family protein yvdd | shim_05580 | P48636 | Negative | 551534 - 552085 | 19803.8 |
| lysm domain/bon superfamily protein | shim_05590 | Not Available | Positive | 552184 - 553851 | 57005.1 |
| putative multidrug export atp-binding/permease protein | shim_05600 | Q2G506 | Positive | 553932 - 555752 | 66818.7 |
| toluene efflux pump membrane transporter ttge | shim_05610 | Q57124 | Negative | 555850 - 559719 | 139757.0 |
| solvent efflux pump periplasmic linker srpa precursor | shim_05620 | Not Available | Negative | 559719 - 560960 | 43515.6 |
| hypothetical protein | shim_05630 | Not Available | Positive | 561185 - 561862 | 23388.4 |
| outer membrane protein assembly factor bamb precursor | shim_05640 | Not Available | Positive | 561889 - 563187 | 46046.6 |
| gtpase der | shim_05650 | Q1GHZ2 | Positive | 563236 - 564714 | 54710.8 |
| fatty acid desaturase | shim_05660 | O34653 | Positive | 564888 - 565868 | 37799.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
