Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial extracellular solute-binding protein, family 7 | shim_05370 | Not Available | Positive | 531873 - 532943 | 38172.4 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_05380 | Not Available | Positive | 532978 - 533529 | 20197.2 |
| sialic acid trap transporter permease protein siat | shim_05390 | Q9HU16 | Positive | 533526 - 534830 | 46269.6 |
| hydroxyquinol 1,2-dioxygenase | shim_05400 | Q471I0 | Positive | 534842 - 535714 | 31945.5 |
| putative trna-dihydrouridine synthase | shim_05410 | Q8X5V6 | Positive | 536029 - 537054 | 37151.6 |
| sulfite exporter taue/safe | shim_05420 | P44070 | Positive | 537170 - 537997 | 28832.0 |
| bifunctional hemolysin/adenylate cyclase precursor | shim_05430 | Not Available | Positive | 538516 - 539949 | 46993.5 |
| hypothetical protein | shim_05440 | Not Available | Positive | 539946 - 540077 | 4559.7 |
| hypothetical protein | shim_05450 | Not Available | Negative | 540152 - 540385 | 8998.06 |
| putative holliday junction resolvase | shim_05460 | Q1GI16 | Negative | 540382 - 540864 | 17586.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
