Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rtx-i toxin determinant a from serotypes 1/9 | shim_05270 | Not Available | Negative | 519364 - 522015 | 94172.5 |
| udp-glucose 4-epimerase | shim_05280 | Not Available | Negative | 522589 - 523476 | 32769.7 |
| n-substituted formamide deformylase precursor | shim_05290 | Not Available | Negative | 523684 - 525492 | 65867.2 |
| long-chain-fatty-acid--coa ligase | shim_05300 | O07610 | Negative | 525831 - 527330 | 54123.5 |
| malonyl-coa decarboxylase (mcd) | shim_05310 | P12617 | Negative | 527327 - 528625 | 48341.4 |
| hth-type transcriptional repressor csir | shim_05320 | P37335 | Negative | 528627 - 529292 | 24895.7 |
| ycii-like protein | shim_05330 | Not Available | Negative | 529337 - 529723 | 13660.1 |
| ureidoglycolate lyase | shim_05340 | Q96GK7 | Positive | 529808 - 530692 | 31130.0 |
| putative malonic semialdehyde reductase rute | shim_05350 | Q398D7 | Positive | 530689 - 531354 | 24593.4 |
| osmc-like protein | shim_05360 | Not Available | Positive | 531367 - 531831 | 16486.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
