Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanidinobutyrase | shim_05170 | Q9I6K2 | Positive | 506294 - 507253 | 34720.4 |
| hypothetical protein | shim_05180 | Not Available | Negative | 507392 - 507739 | 13261.4 |
| hypothetical protein | shim_05190 | Not Available | Positive | 508165 - 508407 | 8996.31 |
| hypothetical protein | shim_05200 | Not Available | Positive | 508930 - 509193 | 9562.89 |
| trypsin | shim_05210 | Not Available | Positive | 509683 - 510396 | 24778.3 |
| threonine efflux protein | shim_05220 | Not Available | Negative | 510400 - 511002 | 21524.1 |
| type i secretion system membrane fusion protein prse | shim_05230 | Q7ANN5 | Negative | 511132 - 512325 | 44697.2 |
| toxin rtx-i translocation atp-binding protein | shim_05240 | P0DKX5 | Negative | 512322 - 514622 | 82795.5 |
| outer membrane efflux protein | shim_05250 | Not Available | Negative | 514619 - 515956 | 47568.7 |
| hypothetical protein | shim_05260 | Not Available | Negative | 516009 - 519143 | 105030.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
