Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major facilitator superfamily protein | shim_05070 | Not Available | Positive | 495903 - 497075 | 41011.1 |
| aspartate-semialdehyde dehydrogenase 2 | shim_05080 | Q92IJ0 | Positive | 497208 - 498230 | 37602.9 |
| putative hydrolase yxep | shim_05090 | Not Available | Negative | 498456 - 499622 | 41426.5 |
| hypothetical protein | shim_05100 | Not Available | Positive | 499755 - 499868 | 4017.64 |
| hypothetical protein | shim_05110 | Not Available | Positive | 500077 - 500781 | 24410.8 |
| hypothetical protein | shim_05120 | Not Available | Positive | 501085 - 502710 | 58693.3 |
| hypothetical protein | shim_05130 | Not Available | Positive | 503130 - 503267 | 5083.2 |
| hypothetical protein | shim_05140 | Not Available | Positive | 503525 - 503917 | 14468.4 |
| putative cytosol aminopeptidase | shim_05150 | A7NG41 | Positive | 504028 - 505443 | 49226.0 |
| dipeptidyl-peptidase 6 | shim_05160 | Not Available | Positive | 505443 - 506297 | 30447.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
