Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-(3-hydroxy-phenyl)propionate/3- hydroxycinnamic acid hydroxylase | shim_04970 | B7NK08 | Positive | 486542 - 488152 | 60138.9 |
| hypothetical protein | shim_04980 | Not Available | Positive | 488156 - 488356 | 6912.17 |
| maleylpyruvate isomerase | shim_04990 | Q9X4F7 | Positive | 488353 - 488991 | 22772.4 |
| hth-type transcriptional regulator sarz | shim_05000 | P62573 | Negative | 488995 - 489492 | 18423.3 |
| hypothetical protein | shim_05010 | Not Available | Positive | 489666 - 490838 | 42248.0 |
| lipopolysaccharide export system atp-binding protein lptb | shim_05020 | Not Available | Positive | 490922 - 491698 | 28074.0 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_05030 | Not Available | Positive | 491691 - 492413 | 26078.9 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_05040 | Not Available | Positive | 492475 - 493506 | 36403.8 |
| leucine/isoleucine/valine transporter permease subunit | shim_05050 | Not Available | Positive | 493509 - 494573 | 37527.5 |
| hypothetical protein | shim_05060 | Not Available | Negative | 494581 - 495723 | 41010.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
