Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cystathionine gamma-lyase | shim_04870 | P66876 | Negative | 476937 - 478079 | 40504.8 |
| ribosomal large subunit pseudouridine synthase e | shim_04880 | Q9HX48 | Positive | 478166 - 478720 | 20824.2 |
| septum site-determining protein mind | shim_04890 | Not Available | Positive | 478832 - 479641 | 29790.0 |
| transmembrane exosortase | shim_04900 | Not Available | Positive | 479678 - 481228 | 56587.2 |
| hypothetical protein | shim_04910 | Not Available | Negative | 481233 - 481514 | 9774.59 |
| transcriptional regulator slya | shim_04920 | Not Available | Negative | 481682 - 482149 | 17919.6 |
| homogentisate 1,2-dioxygenase | shim_04930 | Q9X4F5 | Positive | 482227 - 483582 | 50627.2 |
| fumarylacetoacetate (faa) hydrolase family protein | shim_04940 | Q1ZXQ1 | Positive | 483681 - 484937 | 45333.5 |
| hypothetical protein | shim_04950 | Not Available | Positive | 484952 - 485488 | 19362.2 |
| beta-lactamase 2 precursor | shim_04960 | Not Available | Positive | 485494 - 486444 | 34851.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
