Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanine-n(1)-)-methyltransferase | shim_04770 | Q1GDC3 | Positive | 466141 - 466947 | 29817.5 |
| lysozyme m1 precursor | shim_04780 | Q8FFY2 | Negative | 467269 - 468084 | 31109.5 |
| 50s ribosomal protein l19 | shim_04790 | Q28UF3 | Positive | 468488 - 468862 | 13790.7 |
| 50s ribosomal protein l31 | shim_04800 | Q1GDB7 | Positive | 468874 - 469095 | 8145.71 |
| bifunctional hemolysin/adenylate cyclase precursor | shim_04810 | Not Available | Positive | 469241 - 470749 | 52986.4 |
| zc3h12a-like ribonuclease nyn domain protein | shim_04820 | Not Available | Negative | 470756 - 471310 | 20798.3 |
| aconitate hydratase 2 | shim_04830 | P36683 | Negative | 471458 - 474247 | 99942.4 |
| putative mfs-type transporter yhjx | shim_04840 | O31444 | Negative | 474490 - 475707 | 42349.4 |
| glyoxalase-like domain protein | shim_04850 | Not Available | Negative | 475764 - 476189 | 15842.5 |
| hypothetical protein | shim_04860 | Not Available | Negative | 476278 - 476760 | 18354.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
