Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle protein | shim_04670 | P44518 | Positive | 459144 - 460667 | 54037.9 |
| anhydro-n-acetylmuramic acid kinase | shim_04680 | Not Available | Positive | 460668 - 461285 | 22474.2 |
| hypothetical protein | shim_04690 | Not Available | Positive | 461282 - 461800 | 19178.0 |
| hypothetical protein | shim_04700 | Not Available | Positive | 461800 - 462405 | 22939.2 |
| chorismate mutase | shim_04710 | Not Available | Positive | 462398 - 462694 | 11124.2 |
| 30s ribosomal protein s16 | shim_04720 | A8LMC0 | Positive | 462797 - 463186 | 14229.9 |
| 5,6-dimethylbenzimidazole synthase | shim_04730 | Q2RNG5 | Positive | 463204 - 463833 | 23279.7 |
| ribosome maturation factor rimm | shim_04740 | Q1GDC5 | Positive | 463955 - 464470 | 17998.5 |
| hypothetical protein | shim_04750 | Not Available | Positive | 464525 - 465322 | 29413.1 |
| hypothetical protein | shim_04760 | Not Available | Positive | 465324 - 466148 | 31000.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
