Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_04570 | Not Available | Positive | 452527 - 452781 | 9415.95 |
| transcriptional repressor sdpr | shim_04580 | Not Available | Positive | 452840 - 453196 | 13182.8 |
| hypothetical protein | shim_04590 | Not Available | Negative | 453153 - 453662 | 18293.5 |
| universal stress protein g | shim_04600 | Not Available | Negative | 453675 - 454088 | 14708.8 |
| eama-like transporter family protein | shim_04610 | Not Available | Negative | 454324 - 455208 | 31295.9 |
| hth-type transcriptional regulator dmlr | shim_04620 | Not Available | Negative | 455205 - 456086 | 32512.5 |
| fmn-dependent nadh-azoreductase | shim_04630 | Q28UD5 | Positive | 456214 - 456756 | 19072.6 |
| hypothetical protein | shim_04640 | Not Available | Positive | 456862 - 457212 | 12201.5 |
| prolyl-trna editing protein prox | shim_04650 | Q9D820 | Negative | 457271 - 457789 | 19233.2 |
| carbamoyl phosphate synthase-like protein | shim_04660 | Not Available | Negative | 457779 - 458921 | 40439.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
