Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii polc-type | shim_04470 | Not Available | Positive | 446478 - 447068 | 21308.3 |
| hypothetical protein | shim_04480 | Not Available | Negative | 447136 - 447888 | 27598.4 |
| ribonuclease i | shim_04490 | Q07465 | Positive | 448037 - 448675 | 23880.1 |
| hypothetical protein | shim_04500 | Not Available | Negative | 448682 - 449077 | 14196.8 |
| atp synthase subunit b precursor | shim_04510 | Q16AM5 | Negative | 449201 - 449761 | 20075.0 |
| atp synthase subunit b' | shim_04520 | Q16AM6 | Negative | 449766 - 450308 | 18674.1 |
| atp synthase subunit c | shim_04530 | Q16AM7 | Negative | 450391 - 450615 | 7116.81 |
| atp synthase subunit a | shim_04540 | A8LKI0 | Negative | 450671 - 451429 | 27331.3 |
| atp synthase protein i | shim_04550 | O05329 | Negative | 451432 - 451761 | 12118.6 |
| hypothetical protein | shim_04560 | Not Available | Positive | 452088 - 452423 | 12222.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
