Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii polc-type | shim_04370 | O68045 | Negative | 435971 - 437380 | 50664.4 |
| hypothetical protein | shim_04380 | Not Available | Negative | 437382 - 437900 | 18718.6 |
| choline transport atp-binding protein opuba | shim_04390 | Not Available | Negative | 437916 - 439745 | 66134.4 |
| cation/acetate symporter actp | shim_04400 | P31640 | Negative | 439857 - 441641 | 62902.8 |
| hypothetical protein | shim_04410 | Not Available | Negative | 441657 - 441917 | 9531.6 |
| adenylate kinase | shim_04420 | B6IRS7 | Negative | 441984 - 442667 | 23445.0 |
| dual specificity phosphatase, catalytic domain | shim_04430 | Not Available | Negative | 442921 - 443391 | 17022.5 |
| dna polymerase iii subunit tau | shim_04440 | P74876 | Positive | 443562 - 445328 | 63862.3 |
| nucleoid-associated protein | shim_04450 | B3R1M7 | Positive | 445410 - 445754 | 12151.8 |
| recombination protein recr | shim_04460 | Q5LMJ4 | Positive | 445824 - 446414 | 20924.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
