Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c-type protein napc | shim_04270 | Q56352 | Positive | 419798 - 420982 | 44151.5 |
| trimethylamine-n-oxide reductase precursor | shim_04280 | Q9KRF0 | Positive | 420992 - 423454 | 91204.0 |
| chaperone protein tord | shim_04290 | Not Available | Positive | 423455 - 424072 | 22248.3 |
| hemolysin, chromosomal | shim_04300 | Not Available | Positive | 424429 - 428214 | 133104.0 |
| fumarylpyruvate hydrolase | shim_04310 | O86042 | Positive | 428304 - 429002 | 25009.7 |
| 3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor | shim_04320 | P81594 | Positive | 429096 - 432308 | 117855.0 |
| hypothetical protein | shim_04330 | O28169 | Negative | 432376 - 433008 | 21856.4 |
| acetate kinase | shim_04340 | Q6N143 | Negative | 433087 - 434250 | 41060.2 |
| phosphate acetyltransferase | shim_04350 | Q9X448 | Negative | 434247 - 435188 | 32468.7 |
| fmn reductase (nadh) ntab | shim_04360 | P54990 | Negative | 435338 - 435844 | 18220.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
