Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialic acid trap transporter permease protein siat | shim_04170 | Q312S1 | Positive | 411739 - 413067 | 46094.1 |
| sulfopropanediol 3-dehydrogenase | shim_04180 | Q5LVV1 | Positive | 413079 - 414386 | 46690.4 |
| gluconate 5-dehydrogenase | shim_04190 | Q9X248 | Positive | 414496 - 415140 | 22553.7 |
| sorbitol dehydrogenase | shim_04200 | P0DOW0 | Positive | 415137 - 416117 | 34666.1 |
| universal stress protein g | shim_04210 | Not Available | Positive | 416148 - 416558 | 14594.6 |
| hypothetical protein | shim_04220 | Not Available | Positive | 416591 - 417097 | 18816.8 |
| hypothetical protein | shim_04230 | Not Available | Positive | 417094 - 417648 | 19243.3 |
| (s)-mandelate dehydrogenase | shim_04240 | P20932 | Positive | 417648 - 418748 | 40430.1 |
| hypothetical protein | shim_04250 | Not Available | Negative | 419173 - 419265 | 3369.12 |
| periplasmic nitrate reductase protein nape | shim_04260 | Not Available | Positive | 419550 - 419723 | 6253.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
