Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid oxidation complex subunit alpha | shim_04070 | Q9DBM2 | Positive | 402224 - 404269 | 71108.5 |
| hypothetical protein | shim_04080 | Not Available | Negative | 404293 - 404508 | 7547.7 |
| hypothetical protein | shim_04090 | Q98F28 | Positive | 404746 - 405030 | 10848.7 |
| hypothetical protein | shim_04100 | Not Available | Negative | 405079 - 405954 | 32971.5 |
| thiamine transporter membrane protein | shim_04110 | Not Available | Positive | 406041 - 407699 | 59065.1 |
| Trna-thr | Not Available | Not Available | Positive | 407750 - 407825 | Not Available |
| hth-type transcriptional repressor cytr | shim_04130 | B5XWL8 | Negative | 408603 - 409622 | 37272.6 |
| hypothetical protein | shim_04140 | Not Available | Positive | 409754 - 409942 | 6501.11 |
| sialic acid-binding periplasmic protein siap precursor | shim_04150 | Q9HU18 | Positive | 409964 - 411109 | 41159.6 |
| sialic acid trap transporter permease protein siat | shim_04160 | Not Available | Positive | 411216 - 411728 | 19799.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
