Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulatory protein walr | shim_03970 | O69730 | Positive | 394410 - 394778 | 13276.1 |
| hypothetical protein | shim_03980 | Not Available | Positive | 394775 - 395038 | 9833.07 |
| sensor protein kdpd | shim_03990 | A5A2P0 | Positive | 395038 - 397728 | 96258.2 |
| surface presentation of antigens (spoa) | shim_04000 | Not Available | Positive | 397809 - 398960 | 40385.4 |
| beta-lactamase hydrolase-like protein | shim_04010 | Not Available | Negative | 399049 - 399477 | 14920.5 |
| hypothetical protein | shim_04020 | Q9PFB3 | Negative | 399487 - 399921 | 14866.4 |
| hypothetical protein | shim_04030 | Not Available | Negative | 399921 - 400358 | 14945.8 |
| putative metallo-hydrolase | shim_04040 | Q3JRV4 | Negative | 400439 - 401302 | 31744.3 |
| rna polymerase-binding transcription factor dksa | shim_04050 | Not Available | Positive | 401456 - 401785 | 11650.0 |
| hypothetical protein | shim_04060 | Not Available | Positive | 401869 - 402093 | 8566.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
