Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease d | shim_03870 | A9H9B7 | Negative | 384715 - 385326 | 22895.6 |
| hypothetical protein | shim_03880 | Not Available | Positive | 385431 - 386219 | 29505.6 |
| hypothetical protein | shim_03890 | Not Available | Negative | 386304 - 386486 | 6910.69 |
| hypothetical protein | shim_03900 | Not Available | Negative | 386483 - 386890 | 15122.3 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_03910 | P22731 | Negative | 387560 - 388315 | 27817.4 |
| lipopolysaccharide export system atp-binding protein lptb | shim_03920 | Not Available | Negative | 388333 - 389094 | 27866.9 |
| leucine/isoleucine/valine transporter permease subunit | shim_03930 | Not Available | Negative | 389107 - 390306 | 43763.0 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_03940 | P0A2J2 | Negative | 390310 - 391332 | 36878.1 |
| hypothetical protein | shim_03950 | Not Available | Negative | 391450 - 392802 | 47406.6 |
| helix-turn-helix protein | shim_03960 | Not Available | Positive | 393026 - 394318 | 46552.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
