Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-inositol-3-phosphate glycosyltransferase | shim_03770 | Not Available | Positive | 375057 - 376325 | 46466.9 |
| hypothetical protein | shim_03780 | Not Available | Positive | 376376 - 377386 | 39865.4 |
| core-2/i-branching enzyme | shim_03790 | Not Available | Positive | 377383 - 379080 | 65379.6 |
| sulfotransferase family protein | shim_03800 | Not Available | Positive | 379087 - 380511 | 53690.0 |
| nitrogen regulatory protein | shim_03810 | P30335 | Negative | 380569 - 381033 | 16387.7 |
| putative sigma-54 modulation protein | shim_03820 | P30334 | Negative | 381075 - 381644 | 21108.1 |
| lipopolysaccharide export system atp-binding protein lptb | shim_03830 | Not Available | Negative | 381876 - 382634 | 28131.1 |
| lps-assembly protein lptd | shim_03840 | Not Available | Negative | 382637 - 383113 | 16912.3 |
| hypothetical protein | shim_03850 | Not Available | Negative | 383117 - 383707 | 21079.3 |
| arabinose 5-phosphate isomerase kdsd | shim_03860 | O67500 | Negative | 383741 - 384715 | 33904.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
