Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| blue-light-activated protein | shim_40030 | P07167 | Negative | 4023988 - 4025901 | 70136.2 |
| long-chain-fatty-acid--coa ligase fadd15 | shim_40040 | Not Available | Positive | 4026099 - 4028069 | 72782.2 |
| sulfate/thiosulfate import atp-binding protein cysa | shim_40050 | Not Available | Positive | 4028066 - 4028881 | 30103.5 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_40060 | Not Available | Positive | 4028923 - 4029951 | 36777.0 |
| hypothetical protein | shim_40070 | Not Available | Positive | 4029957 - 4030214 | 9409.17 |
| leucine/isoleucine/valine transporter permease subunit | shim_40080 | Not Available | Positive | 4030214 - 4031290 | 39251.0 |
| hypothetical protein | shim_40090 | Not Available | Positive | 4031367 - 4032650 | 45979.3 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_40100 | Not Available | Positive | 4032724 - 4033542 | 30192.4 |
| phenylacetate-coenzyme a ligase | shim_40110 | Not Available | Positive | 4033682 - 4034902 | 42825.3 |
| hypothetical protein | shim_40120 | Not Available | Positive | 4035043 - 4035345 | 10947.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
