Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial sh3 domain protein | shim_03670 | Not Available | Negative | 364287 - 364877 | 20869.5 |
| hypothetical protein | shim_03680 | Not Available | Negative | 364874 - 365695 | 30343.0 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | shim_03690 | P26264 | Positive | 365815 - 366612 | 28784.8 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | shim_03700 | Q0AST1 | Positive | 366612 - 367412 | 29085.4 |
| putative glycosyl transferase | shim_03710 | Not Available | Positive | 367409 - 368674 | 46770.3 |
| udp-glucose 4-epimerase | shim_03720 | O54067 | Positive | 368671 - 369696 | 37712.0 |
| udp-n-acetyl-alpha-d-glucosamine c6 dehydratase | shim_03730 | P39853 | Negative | 369697 - 371586 | 68765.2 |
| polysaccharide biosynthesis/export protein | shim_03740 | Not Available | Positive | 371945 - 373045 | 39978.8 |
| utp--glucose-1-phosphate uridylyltransferase | shim_03750 | Q05852 | Positive | 373187 - 374080 | 32505.3 |
| udp-glucose 4-epimerase | shim_03760 | P26503 | Positive | 374114 - 375097 | 35755.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
