Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_39630 | Not Available | Negative | 3986941 - 3987711 | 27624.9 |
| ubiquinone/menaquinone biosynthesis c-methyltransferase ubie | shim_39640 | Q1GC56 | Positive | 3987767 - 3988516 | 27987.5 |
| putative protein kinase ubib | shim_39650 | Q9K0N0 | Positive | 3988513 - 3990045 | 56305.9 |
| hypothetical protein | shim_39660 | Not Available | Positive | 3990342 - 3990677 | 12030.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | shim_39670 | Q5LMK7 | Negative | 3990868 - 3991743 | 30884.2 |
| soluble lytic murein transglycosylase precursor | shim_39680 | P44888 | Positive | 3991903 - 3993855 | 72000.1 |
| eama-like transporter family protein | shim_39690 | Not Available | Negative | 3993852 - 3994724 | 31693.5 |
| trna 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmc | shim_39700 | Q02QU5 | Negative | 3994721 - 3995398 | 24258.5 |
| glycine oxidase | shim_39710 | Not Available | Positive | 3995457 - 3996506 | 36730.9 |
| hypothetical protein | shim_39720 | A9WC41 | Negative | 3996510 - 3997313 | 29503.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
