Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide transport system permease protein dppc | shim_39330 | Not Available | Positive | 3951896 - 3953047 | 42474.8 |
| moderate conductance mechanosensitive channel ybio precursor | shim_39340 | Not Available | Negative | 3953109 - 3955451 | 86865.7 |
| udp-n-acetyl-d-glucosamine 6-dehydrogenase | shim_39350 | Q04972 | Positive | 3955620 - 3956942 | 47121.6 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n- acetylglucosaminyltransferase | shim_39360 | Not Available | Positive | 3956964 - 3958181 | 44322.0 |
| gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase | shim_39370 | Q46638 | Positive | 3958178 - 3959410 | 45374.5 |
| alpha-d-kanosaminyltransferase | shim_39380 | Not Available | Positive | 3959414 - 3960484 | 38162.5 |
| phosphoserine phosphatase 1 | shim_39390 | Not Available | Positive | 3960481 - 3961068 | 21774.9 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | shim_39400 | Not Available | Positive | 3961065 - 3962207 | 40075.1 |
| hypothetical protein | shim_39410 | Not Available | Positive | 3962204 - 3962956 | 27935.2 |
| s-adenosyl-l-methionine methyltransferase | shim_39420 | Not Available | Positive | 3962953 - 3963429 | 17553.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
