Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative permease yjgp/yjgq family protein | shim_39230 | Not Available | Negative | 3939759 - 3940862 | 39737.7 |
| putative permease yjgp/yjgq family protein | shim_39240 | Not Available | Negative | 3940901 - 3942028 | 40915.6 |
| phosphatidate cytidylyltransferase | shim_39250 | Q5HGH0 | Negative | 3942069 - 3942959 | 30361.8 |
| putative oxidoreductase | shim_39260 | Q2KIJ5 | Negative | 3942956 - 3943756 | 27948.5 |
| inositol-3-phosphate synthase | shim_39270 | P9WKI0 | Negative | 3943759 - 3944874 | 40057.5 |
| hypothetical protein | shim_39280 | Not Available | Negative | 3944871 - 3945515 | 24189.9 |
| 2-amino-3-ketobutyrate coenzyme a ligase | shim_39290 | Q73KM3 | Negative | 3945521 - 3946747 | 44174.6 |
| glutathione import atp-binding protein gsia | shim_39300 | Q32IB5 | Positive | 3947186 - 3948964 | 64583.4 |
| putative abc transporter-binding protein precursor | shim_39310 | Not Available | Positive | 3948957 - 3950861 | 72277.9 |
| dipeptide transport system permease protein dppb | shim_39320 | Q8FWN8 | Positive | 3950871 - 3951899 | 37515.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
