Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator cdhr | shim_39130 | Q9HTH5 | Negative | 3928252 - 3929202 | 34900.0 |
| putative hth-type transcriptional regulator ydfh | shim_39140 | Not Available | Positive | 3929314 - 3930024 | 25877.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | shim_39150 | A3CVI7 | Positive | 3930034 - 3930951 | 33359.3 |
| aldehyde dehydrogenase puuc | shim_39160 | Not Available | Positive | 3930955 - 3932451 | 53783.7 |
| gamma-glutamylputrescine oxidoreductase | shim_39170 | Not Available | Positive | 3932448 - 3933788 | 47568.1 |
| abc transporter atp-binding protein yoji | shim_39180 | P33951 | Positive | 3933923 - 3935641 | 62562.2 |
| frag1/dram/sfk1 family protein | shim_39190 | Not Available | Positive | 3935638 - 3936417 | 28784.7 |
| bifunctional ipc transferase and dipp synthase | shim_39200 | Not Available | Negative | 3936384 - 3937019 | 22924.9 |
| xylulose kinase | shim_39210 | P12011 | Negative | 3937033 - 3938556 | 54085.8 |
| gdp-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase | shim_39220 | A0QWG6 | Negative | 3938644 - 3939762 | 39745.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
