Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_39030 | Not Available | Positive | 3917023 - 3917643 | 22699.3 |
| chaperone protein tord | shim_39040 | Not Available | Positive | 3917640 - 3918248 | 21860.2 |
| ubiquitinol-cytochrome c reductase fe-s subunit tat signal | shim_39050 | Not Available | Positive | 3918302 - 3918496 | 6644.69 |
| formate dehydrogenase h | shim_39060 | P06131 | Positive | 3918605 - 3921499 | 107374.0 |
| formate dehydrogenase iron-sulfur subunit | shim_39070 | P27273 | Positive | 3921512 - 3922105 | 21315.3 |
| formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit | shim_39080 | P0AEK8 | Positive | 3922237 - 3923451 | 43983.7 |
| cytochrome c2 precursor | shim_39090 | P00064 | Positive | 3923452 - 3924750 | 46413.5 |
| hypothetical protein | shim_39100 | Not Available | Positive | 3924752 - 3924877 | 4150.02 |
| transcriptional regulatory protein zrar | shim_39110 | Q06065 | Positive | 3924882 - 3926264 | 50488.0 |
| sporulation kinase e | shim_39120 | P39764 | Positive | 3926257 - 3928239 | 72291.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
