Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit seca | shim_03570 | A8LQ60 | Positive | 351737 - 354448 | 100783.0 |
| hypothetical protein | shim_03580 | Not Available | Positive | 354542 - 355558 | 35190.5 |
| phosphate-binding protein psts precursor | shim_03590 | Not Available | Positive | 355580 - 357139 | 56560.0 |
| hypothetical protein | shim_03600 | Q5LWK3 | Negative | 357141 - 357923 | 28639.3 |
| major cell-binding factor precursor | shim_03610 | Not Available | Positive | 358110 - 358946 | 30445.7 |
| hypothetical protein | shim_03620 | Not Available | Positive | 359067 - 359738 | 24841.3 |
| hypothetical protein | shim_03630 | Not Available | Positive | 359893 - 360231 | 12867.4 |
| chaperone protein dnaj | shim_03640 | Q5LWJ5 | Negative | 360288 - 361442 | 40742.9 |
| chaperone protein dnak | shim_03650 | Q1GKS3 | Negative | 361519 - 363435 | 68718.3 |
| alpha-ketoglutarate-dependent dioxygenase alkb | shim_03660 | P0CAT7 | Positive | 363642 - 364250 | 22602.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
