Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isonitrile hydratase | shim_38730 | Not Available | Positive | 3887588 - 3888193 | 21483.2 |
| carnitinyl-coa dehydratase | shim_38740 | A8ALR7 | Positive | 3888198 - 3888983 | 28383.9 |
| ubiquinone/menaquinone biosynthesis c-methyltransferase ubie | shim_38750 | Not Available | Negative | 3888984 - 3889616 | 22538.4 |
| hypothetical protein | shim_38760 | Not Available | Positive | 3889697 - 3890548 | 31110.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | shim_38770 | Q5LX42 | Negative | 3890723 - 3892651 | 68219.8 |
| farnesyl diphosphate synthase | shim_38780 | P22939 | Negative | 3892667 - 3893536 | 30581.7 |
| exodeoxyribonuclease 7 small subunit | shim_38790 | Q5LX40 | Negative | 3893620 - 3893862 | 8742.39 |
| histone deacetylase-like amidohydrolase | shim_38800 | P72702 | Negative | 3893859 - 3894794 | 33093.7 |
| leukotoxin | shim_38810 | Not Available | Positive | 3894998 - 3897286 | 78659.1 |
| transcriptional regulatory protein ompr | shim_38820 | P31079 | Negative | 3897293 - 3897994 | 26465.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
