Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_38630 | D2Z027 | Positive | 3876177 - 3877244 | 38178.1 |
| dna-binding protein hu-alpha | shim_38640 | Not Available | Negative | 3877368 - 3877655 | 9959.28 |
| amp nucleosidase | shim_38650 | P0AE13 | Negative | 3877786 - 3879264 | 54661.9 |
| adenine deaminase | shim_38660 | Q5LM18 | Negative | 3879261 - 3881060 | 63627.2 |
| decarboxylase novr | shim_38670 | Q9L9F0 | Positive | 3881373 - 3882128 | 28389.4 |
| fatty acid hydroxylase superfamily protein | shim_38680 | A0A0E0SNE8 | Positive | 3882165 - 3883160 | 39148.3 |
| hth-type transcriptional regulator cdhr | shim_38690 | Not Available | Negative | 3883157 - 3884122 | 35495.8 |
| acryloyl-coa reductase (nadh) | shim_38700 | O34421 | Positive | 3884177 - 3885337 | 43147.4 |
| hypothetical protein | shim_38710 | Not Available | Positive | 3885337 - 3885570 | 8191.18 |
| hypothetical protein | shim_38720 | Not Available | Positive | 3885567 - 3887588 | 69624.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
