Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma-e factor chrr | shim_38530 | P40685 | Negative | 3867406 - 3868041 | 22505.0 |
| ecf rna polymerase sigma factor rpoe | shim_38540 | Q3IYV6 | Negative | 3868038 - 3868472 | 16624.9 |
| acetophenone carboxylase gamma subunit | shim_38550 | Q01262 | Positive | 3868921 - 3870930 | 69876.8 |
| peptide methionine sulfoxide reductase msra 3 | shim_38560 | Q7UJI2 | Negative | 3870963 - 3871469 | 18803.0 |
| peptide methionine sulfoxide reductase msrb | shim_38570 | P65447 | Negative | 3871466 - 3871918 | 16679.1 |
| hth-type transcriptional regulator cdhr | shim_38580 | G3XCU2 | Negative | 3872010 - 3873050 | 38383.1 |
| thioredoxin | shim_38590 | Not Available | Negative | 3873208 - 3873615 | 14737.9 |
| cytochrome c biogenesis protein transmembrane region | shim_38600 | Not Available | Negative | 3873632 - 3874345 | 24549.8 |
| putative amino-acid metabolite efflux pump | shim_38610 | Not Available | Negative | 3874403 - 3875278 | 30569.5 |
| glyoxalase-like domain protein | shim_38620 | Not Available | Positive | 3875618 - 3875986 | 13357.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
