Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine-protein kinase bara | shim_38430 | Q54YZ9 | Negative | 3856885 - 3859311 | 89502.2 |
| abc transporter, phosphonate, periplasmic substrate-binding protein | shim_38440 | Not Available | Negative | 3859317 - 3860246 | 34189.2 |
| hypothetical protein | shim_38450 | Not Available | Negative | 3860442 - 3861002 | 20637.6 |
| hypothetical protein | shim_38460 | Not Available | Negative | 3860999 - 3862225 | 42481.6 |
| hypothetical protein | shim_38470 | Not Available | Negative | 3862225 - 3862719 | 18430.2 |
| cyclopropane-fatty-acyl-phospholipid synthase | shim_38480 | O53732 | Negative | 3862712 - 3863869 | 43188.7 |
| protoporphyrinogen oxidase | shim_38490 | Not Available | Negative | 3863860 - 3865152 | 47930.1 |
| hypothetical protein | shim_38500 | Not Available | Positive | 3865319 - 3866092 | 29156.2 |
| putative oxidoreductase | shim_38510 | Q8CN40 | Positive | 3866089 - 3866814 | 25775.5 |
| hypothetical protein | shim_38520 | Not Available | Negative | 3866826 - 3867332 | 19881.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
