Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,5-anhydro-d-fructose reductase | shim_38330 | Q2I8V6 | Negative | 3848376 - 3849359 | 35137.7 |
| hypothetical protein | shim_38340 | Not Available | Positive | 3849556 - 3849897 | 12469.0 |
| hypothetical protein | shim_38350 | Not Available | Negative | 3849971 - 3850366 | 13856.3 |
| eve domain protein | shim_38360 | Q91YJ3 | Negative | 3850411 - 3850830 | 15860.6 |
| ycii-like protein | shim_38370 | Not Available | Negative | 3850830 - 3851105 | 9780.83 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | shim_38380 | Q1GCQ4 | Negative | 3851109 - 3852062 | 32890.2 |
| trna n6-adenosine threonylcarbamoyltransferase | shim_38390 | Q5LLR7 | Negative | 3852059 - 3853156 | 37661.4 |
| uroporphyrinogen-iii synthase | shim_38400 | Not Available | Positive | 3853233 - 3853967 | 25281.3 |
| hypothetical protein | shim_38410 | Not Available | Positive | 3854025 - 3855293 | 43543.8 |
| hypothetical protein | shim_38420 | Not Available | Positive | 3855304 - 3856806 | 54443.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
